Single nucleotide polymorphisms affect both cis- and trans-eQTLs

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Single nucleotide polymorphisms affect both cis- and trans-eQTLs.

Single nucleotide polymorphisms (SNPs) between microarray probes and RNA targets can affect the performance of expression array by weakening the hybridization. In this paper, we examined the effect of the SNPs on Affymetrix GeneChip probe set summaries and the expression quantitative trait loci (eQTL) mapping results in two eQTL datasets, one from mouse and one from human. We showed that removi...

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ژورنال

عنوان ژورنال: Genomics

سال: 2009

ISSN: 0888-7543

DOI: 10.1016/j.ygeno.2009.01.011